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dmela     (Biological Networks)

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This network dataset is in the category of Biological Networks



Visualize bio-dmela's link structure and discover valuable insights using the interactive network data visualization and analytics platform. Compare with hundreds of other network data sets across many different categories and domains.

Metadata

CategorySparse Networks
CollectionBiological Networks
Tags
Shortprotein-protein interactions
Vertex typeProteins
Edge typeProtein interactions
FormatUndirected
Edge weightsUnweighted
DescriptionNodes are proteins and the edges represent protein-protein interactions

Please cite the following if you use the data:

@inproceedings{nr,
     title={The Network Data Repository with Interactive Graph Analytics and Visualization},
     author={Ryan A. Rossi and Nesreen K. Ahmed},
     booktitle={AAAI},
     url={https://networkrepository.com},
     year={2015}
}

Note that if you transform/preprocess the data, please consider sharing the data by uploading it along with the details on the transformation and reference to any published materials using it.

@article{singh2008-isorank-multi,
     author = {Singh, Rohit and Xu, Jinbo and Berger, Bonnie},
     title = {Global alignment of multiple protein interaction networks with application to functional orthology detection},
     journal = {PNAS},
     year = {2008},
     volume = {105},
     pages = {12763-12768},
     number = {35}
}

Network Data Statistics

Nodes7.4K
Edges25.6K
Density0.000935753
Maximum degree190
Minimum degree1
Average degree6
Assortativity-0.0465044
Number of triangles8.7K
Average number of triangles1
Maximum number of triangles225
Average clustering coefficient0.0118502
Fraction of closed triangles0.0149699
Maximum k-core12
Lower bound of Maximum Clique7

Network Data Preview

Interactive visualization of bio-dmela's graph structure

Interactively explore the networks graph structure!

  • Use mouse wheel to zoom in/out
  • Mouseover nodes to see their degree
  • Drag network to see more details

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Interactive Visualization of Node-level Properties and Statistics

Tools for Interactive Exploration of Node-level Statistics

Visualize and interactively explore bio-dmela and its important node-level statistics!

  • Each point represents a node (vertex) in the graph.
  • A subset of interesting nodes may be selected and their properties may be visualized across all node-level statistics. To select a subset of nodes, hold down the left mouse button while dragging the mouse in any direction until the nodes of interest are highlighted.This feature allows users to explore and analyze various subsets of nodes and their important interesting statistics and properties to gain insights into the graph data
  • Zoom in/out on the visualization you created at any point by using the buttons below on the left.
  • Once a subset of interesting nodes are selected, the user may further analyze by selecting and drilling down on any of the interesting properties using the left menu below.
  • We also have tools for interactively visualizing, comparing, and exploring the graph-level properties and statistics.
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Interactive Visualization of Node-level Feature Distributions

Node-level Feature Distributions

degree distribution

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degree CDF

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degree CCDF

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coloring distribution

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coloring CDF

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coloring CCDF

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kcore distribution

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kcore CDF

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kcore CCDF

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tcore distribution

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tcore CDF

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tcore CCDF

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triangle distribution

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triangle CDF

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triangle CCDF

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All visualizations and analytics are interactive and flexible for exploratory analysis and data mining in real-time and include the following features:

  • Degree, k-core, triangles, and triangle-core distributions. We include plots for each of the fundamental graph features and counts of the number with a particular property (i.e., number of nodes that form k triangles or have degree k, etc.)
  • We also include the CDF and CCDF distributions for each graph in the collection.
  • All visualizations and plots are zoomable. One may zoom-in or out on the data visualization using scrolling.
  • Panning. Users may also click anywhere on the plot and move the mouse in any direction to pan.
  • Adjust scale and other application dependent-parameters. All interactive visualizations may adjust the scale which is particularly important in certain types of graph data that contain highly skewed graph properties (power-lawed graphs and/or networks) such as degree distribution.